PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_B01AE830F.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 158aa    MW: 17936.4 Da    PI: 10.1513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_B01AE830F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26e-161564148
                           TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd+ lv+ +++ Gg+  +W++ ++  g++R++k+c++rw +yl
  Traes_2AL_B01AE830F.1 15 KGPWTEEEDKTLVEHIQKRGGNvgSWRRLPKAAGLNRCGKSCRLRWTNYL 64
                           79**********************************************97 PP

2Myb_DNA-binding53.45.8e-1770114147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg++T eE+ l++ +++ lG++ W+tIa ++  gRt++++k++w+++
  Traes_2AL_B01AE830F.1  70 RGNFTDEEERLIITLHAGLGNK-WATIATHLE-GRTDNEIKNYWNTH 114
                            89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7061064IPR017930Myb domain
SuperFamilySSF466892.98E-2812111IPR009057Homeodomain-like
SMARTSM007171.7E-101466IPR001005SANT/Myb domain
PfamPF002493.6E-141564IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-221671IPR009057Homeodomain-like
CDDcd001678.99E-81764No hitNo description
PROSITE profilePS5129426.93365119IPR017930Myb domain
SMARTSM007173.4E-1569117IPR001005SANT/Myb domain
PfamPF002496.7E-1570114IPR001005SANT/Myb domain
CDDcd001678.51E-1172115No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2672119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MGRSPCCCRD ADVKKGPWTE EEDKTLVEHI QKRGGNVGSW RRLPKAAGLN RCGKSCRLRW  60
TNYLRPDIKR GNFTDEEERL IITLHAGLGN KWATIATHLE GRTDNEIKNY WNTHIRKKLL  120
RMGVDPVTHQ QLPPGQSHHH LNATSIAHHP GALLWAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-291011922128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1569041e-116AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene).
GenBankBT0543981e-116BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds.
GenBankHQ8586911e-116HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581590.23e-91PREDICTED: transcription factor MYB39
SwissprotQ8GWP01e-63MYB39_ARATH; Transcription factor MYB39
TrEMBLW5AW011e-115W5AW01_WHEAT; Uncharacterized protein
STRINGSi012660m2e-87(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.29e-70myb domain protein 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]